PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g02050.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 874aa    MW: 93307.7 Da    PI: 6.5533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g02050.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-087057431255
                                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Zjn_sc00007.1.g02050.1.am.mk 705 RRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 743
                                   ******************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.17693742IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-8699748IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-12701753IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5705743IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-8705747No hitNo description
Gene3DG3DSA:4.10.280.106.9E-12706752IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MAVEANTART LLPLPPRVSA SSVSSAPTVG DLLTRVSNAV TTNSSASRHR ECSSPRSSLL  60
SRILHRRSRS VGFSCRLRLS LPRYCSSGVA KEDSVASADE AAAAPKVVGR RAEPPRDSPR  120
RSLAGMYMSL TAYSDRCCPS VSHTLTKRLR LWRAEKKAPA PAPAADDALP ASLGLGASLV  180
LLLSKSAAEL SRMAELRAQM ERLMTDVRAD VRSCNGRPSA SDGHTDSASF VKEPIVCVGD  240
QEGALSHSRG QRTGDALASI GAHSGSQTGA PASDGGSGNA GIRDEMDQME AELESELSRL  300
QADEASNDEE SVTPQQDHVA EADAKSGDTS GIHSACSVSG IEDADLDQDE EEEEDDEDDD  360
EREESPTHGG VPARELERRL HELLQSRHEA RIAELESALE RARRKLKEKE REACRWRDAA  420
KLASRFTDES RLSGIGDSQG SGSGRKGTGR TARKEQRMAR RLQLVLELIV GHHLRACEAW  480
PGDMSLIKLS SRTKHLAHAH PMQPSGREMK GDSEGGQEDD FFNQLLSTPP TAWAELDSGK  540
SPWELPAGSS EAPAFDESAF LASRLRHDQI GGDKPVMLHL SDLHGLAGVG GGEDGGNAGF  600
LPLPLFTDRT REDQALYNGF GAAGTHGASA VQPFGQVRHE KPVPAADQCQ RRASEEARLR  660
LAGRQRRVHQ PPKPRREEGR RHRGSSACGR GGDKLQTLTA SPNLRRERIA ERMKALQELV  720
PNANKTDKAS MLDEIIDYVK FLQIQVKVLS MSRLGGASAV APLVANMSPE GNGNGTEIEN  780
GSSSLRLTEQ QVAKLMEEDT GSAMQYLQGK GLCLMPISLA SVISSATSSS LPTGGAGGPQ  840
RDSGSPATTS PPLANGASGG DSRTVRDAGS GEKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0561722e-59BT056172.1 Zea mays full-length cDNA clone ZM_BFb0062K22 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-44LJRHL1-like 1